Publications
Full Curriculum Vitae 
Software Available 
Watch the Talk 
Open Access
2022
Temperature mediated transgenerational plasticity influences movement behaviour in the green algae Chlamydomonas reinhardtii. H. Meier, I. Schuman, T. Layden, A. Ritz, C. Kremer, and S. Fey. Functional Ecology. In press.
A. Bumin, A. Ritz, D. Slonim, T. Kaveci, and K. Huang. 13th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2022. Best Student Paper Award.
A. Nambiar, M. Heflin, S. Liu, J. M. Forsyth, S. Maslov, M. Hopkins, and A. Ritz. Journal of Computational Biology 2022.
T. Rubel, P. Singh, and A. Ritz. Proceedings of the Pacific Symposium on Biocomputing 2022.
2021
E. Leininger, K. Shaw, N. Moshiri, K. Neiles, G. Onsongo, and A. Ritz. PLOS Computational Biology 2021.
H. Zeng, J. Zhang, G. A. Preising, T. Rubel, P. Singh, and A. Ritz. Nucleic Acids Research 2021.
H. Lue, D. Derrick, S. Rao, A. Van Gaest, L. Cheng, J. Podolak, S. Lawson, C. Xue, D. Garg, R. White III, C. Ryan, J. Drake, A. Ritz, L. M. Heiser, and G. V. Thomas. Cell Reports Medicine 2021.
2020
A. Platenkamp, E. Detmar, L. Sepulveda, A. Ritz, S.L. Rogers, and D. A. Applewhite. Molecular Biology of the Cell 2020.
T. Rubel and A. Ritz. 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2020.
A. Nambiar, M. Heflin, S. Liu, S. Maslov, M. Hopkins, and A. Ritz. 11th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) 2020.
A. R. Lazarte and A. Ritz. 5th International Conference on Research in Equity and Sustained Participation in Engineering, Computing, and Technology (RESPECT) 2020.
O. L. Rodriguez, A. Ritz, A. J. Sharp, A. Bashir. Bioinformatics.
2019
A. King, I. Youssef, A. Ritz. 10th Workshop on Integrative Data Analysis in Systems Biology (IDASB) 2019.
Z. DiNardo, K. Tomlinson, A. Ritz, L. Oesper. Bioinformatics.
N. Franzese, A. Groce, T. M. Murali, A. Ritz. PLOS Computational Biology.
I. Youssef, J. Law, A. Ritz. BMC Bioinformatics 2019.
M. Swanberg, I. Globus-Harris, I. Griffith, A. Ritz, A. Bray, A. Groce. 19th Privacy Enhancing Technologies Symposium (PETS) 2019.
M. Bern, A. King, D. A. Applewhite, A. Ritz. BMC Bioinformatics.
2018
K. A. Peters, E. Detmar, L. Seulveda, C. Del Valle, R. Valsquier, A. Ritz, S. L. Rogers, D. A. Applewhite. Journal of Visualized Experiments (JoVE) (138), e58325.
Z. Campbell, A. Bray, A. Ritz, A. Groce. To appear at the International Conference on Data Intelligence and Security (ICDIS 2018).
A. Ritz. ACM Special Interest Group in Computer Science Education (SIGCSE 2018). [resources]
2017
H. Lue, J. Podolak, K. Kolahi, L. cheng, S. Rao, D. Garg, C. Xue, J. Rantala, J. Tyner, K. Thornburg, A. Martinez-Acevedo, J. Liu, C. Amling, C. Truillet, M. Evans, V. O'Donnell, D. Nomura, J. Drake, A. Ritz, G. Thomas. Genes & Development 2017. Oct 15;31(20):2067- 2084.
A. Bharadwaj, D. P. Singh, A. Ritz, A. N. Tegge, C. L. Poirel, P. Kraikivski, N. Adames, K. Luther, S. D. Kale, J. Peccoud, J. J. Tyson, T. M. Murali. Bioinformatics 2017. 33(19):3134-3136.
. A. Ritz, B. Avent, T. M. Murali. IEEE Transactions on Computational Biology and Bioinformatics (TCBB) 2017. 15(5):1042-1055.
2016
. A. Ritz, C. L. Poirel, A. N. Tegge, N. Sharp, A. Powell, K. Simmons, S. Kale, T. M. Murali. NPJ Systems Biology and Applications, 2:16002, 2016.
2015
2014
A. Ritz, A. Bashir, S. Sindi, D. Hsu, I. Hajirasouliha, B.J. Raphael. Bioinformatics 2014. 30(24):3458-66.
A. Ritz and T. M. Murali. Proceedings of the Fifth ACM Conference on Bioinformatics, Computational Biology, and Health Informatics 2014. 249–258. Nominated for Best Paper Award.
A. Ritz, A. N. Tegge, H. Kim, C. L. Poirel, T. M. Murali. Trends in Biotechnology, 32(7), 356-362, 2014. AR, ANT joint first authors.
2013
2012
L. Oesper, A. Ritz, S. J. Aerni, R. Drebin, B. J. Raphael. BMC Bioinformatics 2012. 13(Suppl 6):S10. Special Issue of RECOMB-Seq 2012.
A. Ritz. Ph.D. Thesis, Brown University (2012)
L. Cao, Y. Ding, N. Hung, K.Yu, A. Ritz, B. J. Raphael, A. R. Salomon. PLoS ONE 2014. 7,10:e46725
2011
A. Stuckey, A. Fischer, D. H. Miller, S. Hillenmeyer, K. K. Kim, A. Ritz, R. K. Singh, B. J. Raphael, L. Brard, A. S. Brodsky. BMC Cancer 2011. 11:308.
A. Ritz, P. Pareis, M. M. Ittmann, C. Collins, B. J. Raphael. BMC Bioinformatics 2011. 12:114. Special Issue of RECOMB-CCB 2010.
Highly Accessed.
2010
T. O'Brien, A. Ritz, B. J. Raphael, D. H. Laidlaw. IEEE Transactions on Visualization and Computer Graphics 16(6):918-26. Proceedings of the IEEE Information Visualization Conference (InfoViz) 2010.
A. Ritz, A. Bashir, B. J. Raphael. Bioinformatics 2010. 26(10): 1291-1298. Special Issue of HiTSeq 2010.
D. S. Gross, R. Atlas, J. Rzeszotarski, E. Turetsky, J. Christensen, S. Benzaid, J. Olson, T. Smith, L. Steinberg, J. Sulman, A. Ritz, B. Anderson, C. Nelson, D. R. Musicant, L. Chen, D. C. Snyder, J. J. Schauer. Environmental Modelling & Software 2010. 25(6):760-769.
2009
V. Nguyen, L. Cao, J. T. Lin, N. Hung, A. Ritz, K. Yu, R. Jianu, S. P. Ulin, B. J. Raphael, D. H. Laidlaw, L. Brossay, A. R. Salomon. Molecular and Cellular Proteomics 2009. 8: 2418-2431.
A. Ritz, G. Shakhnarovich, A. R. Salomon, B. J. Raphael. Bioinformatics 2009. 25(1):14-21.
< 2009
A. Ritz. Sc. M. Thesis, Brown University (2008).
L. Cao, K. Yu, C. Banh, V. Nguyen, A. Ritz, B. J. Raphael, Y. Kawakami, T. Kawakami, A. R. Salomon, Journal of Immunology 2007. 179: 5864-5876.
B. J. Anderson, D. S. Gross, D. R. Musicant, A. Ritz, T. G. Smith, L. E. Steinberg. Proceedings of the Sixth SIAM International Conference on Data Mining (SDM) 2006. pp165-175.
aritz-at-reed-dot-edu
Curriculum Vitae 